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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13256994_13257461_R

Intron Information:

Intron Rank:
142904
Intron Class:
major
Intron Phase:
Intron Coordinates:
13256994 - 13257461
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
ATTTCTTGTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
67
0.42
1.1
57.7
39
Major PPT
73
0.52
1
71.7
39.1
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
54.9
0.14
1.7
69.26
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024204
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043734
13256953 - 13280593
23641