Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132643513_132732219_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

132643513 - 132732219

Intron Length:

88707

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGTAG

5'SS Class:

major

3'SS Sequence:

TTGTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

ATTTTGCTAACT

Flanking Amino Acid:

VFLLMVSCVKGFIYTCGGTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

66.6

41.6

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

81.9

0.72

0.9

81.2

36.5

Minor 5ss

34.7

-1.7

3.5

45.4

49.7

Minor BPS

54.9

0.23

2.3

82.68

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016914

132643335 - 132861662

218328