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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132732443_132758381_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
132732443 - 132758381
Intron Length:
25939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTAACCATGAGT
Flanking Amino Acid:
GHPHPANFRTRLTGFHLPPP
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
50.3
0.09
2
74.07
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016217
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016914
132643335 - 132861662
218328