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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132758495_132797043_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
132758495 - 132797043
Intron Length:
38549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTAAGTAATA
Flanking Amino Acid:
SAHGFKVYYEELQSSSCGNP
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.8
71
40.1
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
46.5
-0.2
2.3
65.31
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016217
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016914
132643335 - 132861662
218328