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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13291080_13297772_R

Intron Information:

Intron Rank:
146510
Intron Class:
major
Intron Phase:
Intron Coordinates:
13291080 - 13297772
Intron Length:
6693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.8
81.6
34.7
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035423
13290903 - 13307198
16296