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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132934438_132956339_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
132934438 - 132956339
Intron Length:
21902

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCCATGACA
5'SS Class:
major
3'SS Sequence:
TTTCTGTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGGTTTAGTT
Flanking Amino Acid:
FKNKCHKIIIRLTGSFVPDL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
67.7
37.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.9
0.72
0.8
77.5
31.2
Minor 5ss
17.7
-3.7
3.4
24
36.4
Minor BPS
47.5
-0.1
2
66.65
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020679
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036872
132931534 - 132999747
68214