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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132939033_132952411_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
132939033 - 132952411
Intron Length:
13379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCATTTTG
5'SS Class:
weak_major
3'SS Sequence:
ATAAATTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATTC
Flanking Amino Acid:
CCTNSSGSFIKFDLEIGYDT
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52
0.05
1.3
56.6
43.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62
0.27
1.2
60.9
43.8
Minor 5ss
41.5
-0.9
2.8
55.9
42.2
Minor BPS
51.7
0.03
1.6
61.72
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020679
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020218
132934319 - 132998307
63989