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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_132998300_132999335_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
132998300 - 132999335
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTTCTAATG
Flanking Amino Acid:
QWSANIPICIFPCLSNFTAP
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
68.8
35.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.5
0.8
0.9
84
31
Minor 5ss
44.7
-0.6
2.6
59.7
39.2
Minor BPS
57.3
0.09
1.7
64.52
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020679
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036872
132931534 - 132999747
68214