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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133035968_133036527_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133035968 - 133036527
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACTTGTACA
Flanking Amino Acid:
SYEGFNISFSEYNLEPCEDP
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.2
0.75
0.8
80.3
31.8
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
46.7
-0.2
1.8
56.32
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027724
133035673 - 133105925
70253