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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133036717_133056304_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133036717 - 133056304
Intron Length:
19588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
CTTTTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATACCTTAACA
Flanking Amino Acid:
VWSAPLPRCVAECGASTTNN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.3
44.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88
0.85
0.7
85.5
27.9
Minor 5ss
32.9
-2
3.4
40.6
45.6
Minor BPS
83.6
1.05
1.1
85.95
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027724
133035673 - 133105925
70253