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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13304962_13306772_R

Intron Information:

Intron Rank:
146513
Intron Class:
major
Intron Phase:
Intron Coordinates:
13304962 - 13306772
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTTTTCA
5'SS Class:
major
3'SS Sequence:
TTTACTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTCACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
63.1
37.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
75
0.56
1
75.2
33.5
Minor 5ss
42.1
-0.9
2.5
51.7
44.7
Minor BPS
69.5
0.69
1.5
82.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035423
13290903 - 13307198
16296