Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13306895_13364380_R

Intron Information:

Intron Rank:

146514

Intron Class:

major

Intron Phase:

Intron Coordinates:

13306895 - 13364380

Intron Length:

57486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCATTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

79.4

29.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.1

0.68

0.8

78.1

Minor 5ss

38.6

-1.3

3.3

53.2

Minor BPS

63.5

0.5

1.6

78.46

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026178

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044016

13306682 - 13411142

104461