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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133101823_133104568_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133101823 - 133104568
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TCTACAGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAATA
Flanking Amino Acid:
NDYVISLAFISIEPNYDFLY
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74
0.54
1
69.7
40.5
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
60.5
0.33
1.8
76.96
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027724
133035673 - 133105925
70253