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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133104713_133105813_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
133104713 - 133105813
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCTGTAAG
5'SS Class:
major
3'SS Sequence:
AAATGAAGATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTCAATTAAAT
Flanking Amino Acid:
NTMHLAFRSDGVILKAAQRC
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
61.5
44.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
40.1
-0.5
1.7
34.9
43.6
Minor 5ss
36.1
-1.6
2.5
34.1
41.5
Minor BPS
51.6
0.13
1.9
73.48
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027724
133035673 - 133105925
70253