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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133182015_133183739_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133182015 - 133183739
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTTCTGAGAAAT
Flanking Amino Acid:
RWNYPIPICLAQCGGAMSDF
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
39.5
-0.7
2.3
60.24
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037493
133175799 - 133212863
37065