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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133191030_133205513_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133191030 - 133205513
Intron Length:
14484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
NKQGFHIVYQAYQLQSCPDP
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.8
81.6
34.5
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037493
133175799 - 133212863
37065