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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133205703_133210416_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133205703 - 133210416
Intron Length:
4714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCCCTTTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
NWNHPLPRCEALCGGNITAM
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.54
0.8
68.1
32.2
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037493
133175799 - 133212863
37065