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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133210595_133212649_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133210595 - 133212649
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
TEPIYDFITVWDGPDQTSPQ
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.6
0.69
0.8
80.5
31.5
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037493
133175799 - 133212863
37065