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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133387970_133389364_F

Intron Information:

Intron Rank:
144626
Intron Class:
major
Intron Phase:
Intron Coordinates:
133387970 - 133389364
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
75.2
0.57
0.9
71
33.3
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041623
133387203 - 133390395
3193