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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13378687_13379514_F

Intron Information:

Intron Rank:
127381
Intron Class:
major
Intron Phase:
Intron Coordinates:
13378687 - 13379514
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTAG
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AAAACTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
34.8
-1.7
3.5
46
49.3
Minor BPS
53.1
0.08
1.6
59.85
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037414
13378546 - 13380340
1795