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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13379588_13380031_F

Intron Information:

Intron Rank:
127382
Intron Class:
major
Intron Phase:
Intron Coordinates:
13379588 - 13380031
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AACATAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
75
38.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64.6
0.33
1
55.3
42.8
Minor 5ss
38.2
-1.3
3.1
49.4
46.8
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037414
13378546 - 13380340
1795