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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133852550_133856501_R

Intron Information:

Intron Rank:
141972
Intron Class:
major
Intron Phase:
Intron Coordinates:
133852550 - 133856501
Intron Length:
3952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TGTTGTTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
73.7
0.53
1
77.4
30.2
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
48.5
-0
2.1
73.22
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023704
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038821
133852417 - 133872270
19854