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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133932985_133937365_R

Intron Information:

Intron Rank:
150212
Intron Class:
major
Intron Phase:
Intron Coordinates:
133932985 - 133937365
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTTTCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
74.1
0.54
1
65.9
44.2
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
56.3
0.28
1.8
77.06
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028390
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045099
133932825 - 133937614
4790