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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_133942700_133944158_R

Intron Information:

Intron Rank:
150209
Intron Class:
major
Intron Phase:
Intron Coordinates:
133942700 - 133944158
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAGCC
5'SS Class:
major
3'SS Sequence:
TTTCACTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
60.7
36.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.3
0.68
0.9
78
35.1
Minor 5ss
34.1
-1.8
3.1
43.3
43.9
Minor BPS
73.4
0.81
1.2
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028390
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038094
133934824 - 133944407
9584
ENSAPLT00000042246
133937339 - 133944407
7069