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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134051288_134053721_F

Intron Information:

Intron Rank:
142544
Intron Class:
major
Intron Phase:
Intron Coordinates:
134051288 - 134053721
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040203
134051101 - 134054534
3434