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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134138878_134144253_R

Intron Information:

Intron Rank:
146910
Intron Class:
major
Intron Phase:
Intron Coordinates:
134138878 - 134144253
Intron Length:
5376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.7
0.73
0.7
76.9
25
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
46.9
-0.1
1.9
71.05
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026348
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023096
134138777 - 134150058
11282