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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134167173_134167592_F

Intron Information:

Intron Rank:
143364
Intron Class:
major
Intron Phase:
Intron Coordinates:
134167173 - 134167592
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TATTCTGTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
86.1
0.81
0.6
85
22.7
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
48.3
-0
2.3
74.15
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021483
134162623 - 134171685
9063