About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134218716_134219557_F

Intron Information:

Intron Rank:
140564
Intron Class:
major
Intron Phase:
Intron Coordinates:
134218716 - 134219557
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGAGCA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
64.2
33.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
32.6
-2
3.3
41.4
40
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023836
134191312 - 134219608
28297