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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134229617_134241578_R

Intron Information:

Intron Rank:
142801
Intron Class:
major
Intron Phase:
Intron Coordinates:
134229617 - 134241578
Intron Length:
11962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
AACTTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTCCTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
77.9
0.63
0.9
74.1
39.6
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
71.5
0.75
1.6
90.42
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028126
134225604 - 134241635
16032