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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134293298_134294051_R

Intron Information:

Intron Rank:
138973
Intron Class:
major
Intron Phase:
Intron Coordinates:
134293298 - 134294051
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCTT
5'SS Class:
major
3'SS Sequence:
TGGTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGATCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
43.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.1
0.5
1.1
75.7
38.5
Minor 5ss
50
0
2.8
74.1
42.3
Minor BPS
53
0.17
1.7
67.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022265
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022028
134293251 - 134298031
4781