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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134422436_134428976_R

Intron Information:

Intron Rank:
151360
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
134422436 - 134428976
Intron Length:
6541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTTCTCT
5'SS Class:
weak_major
3'SS Sequence:
TATTTTTCAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTTTATTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.2
59
40.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.4
0.62
0.9
75.3
34
Minor 5ss
49
-0.1
2.4
67.1
43.7
Minor BPS
58.8
0.14
1.8
66.62
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028984
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036455
134422213 - 134441763
19551