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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134465399_134465956_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134465399 - 134465956
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGCA
5'SS Class:
major
3'SS Sequence:
TGTTTGGGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
MGMFTVIDQERRYLLPV
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
63.2
35
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.2
0.46
1.1
61.5
48.6
Minor 5ss
36.9
-1.5
3.3
44.8
45.1
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
SYBU
Ensembl Gene ID:
ENSAPLG00000002942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020593
134465351 - 134533412
68062