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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134505050_134506299_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134505050 - 134506299
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
TTGTTAGAAATT
Flanking Amino Acid:
FYCTEGAIVNDDTGCPSSQS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
86.3
0.82
0.6
85.5
21.9
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
43.8
-0.3
2.4
67.84
43.8

Associated Gene:

Gene:
SYBU
Ensembl Gene ID:
ENSAPLG00000002942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002983
134504773 - 134533412
28640