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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134531165_134532298_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134531165 - 134532298
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
AGTGCTACAACA
Flanking Amino Acid:
LKESESKLKERETEIEELKT
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77.3
31.9
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
85.2
0.79
0.8
79.9
32.2
Minor 5ss
50.8
0.03
2.5
69.7
41.2
Minor BPS
47
-0.2
1.9
59.85
39.8

Associated Gene:

Gene:
SYBU
Ensembl Gene ID:
ENSAPLG00000002942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020593
134465351 - 134533412
68062
ENSAPLT00000002983
134504773 - 134533412
28640
ENSAPLT00000044876
134478925 - 134533626
54702
ENSAPLT00000031831
134524862 - 134533412
8551