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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134572956_134574843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134572956 - 134574843
Intron Length:
1888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTGTCTTAATA
Flanking Amino Acid:
QKLIETGERERLKDLLRAKL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
67.4
44
Major BPS
80
0.75
1
78.6
31
Major PPT
71.2
0.48
0.9
66.9
38.7
Minor 5ss
32.6
-2
3.2
41
45.3
Minor BPS
72.5
0.7
1.3
76.94
34.3

Associated Gene:

Gene:
ENY2
Ensembl Gene ID:
ENSAPLG00000004824
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036860
134569383 - 134575381
5999
ENSAPLT00000018709
134572143 - 134575381
3239
ENSAPLT00000004962
134569383 - 134575381
5999