About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134584056_134590584_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134584056 - 134590584
Intron Length:
6529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ACTTCCTAAAGT
Flanking Amino Acid:
GRVMNLSVTLDTSLQKPREV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80
0.67
0.9
72.7
37
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
60.6
0.41
2
77.84
44.7

Associated Gene:

Gene:
NUDCD1
Ensembl Gene ID:
ENSAPLG00000004835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004986
134575476 - 134609908
34433