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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134590771_134594545_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134590771 - 134594545
Intron Length:
3775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTAACTGACT
Flanking Amino Acid:
RGDSASEKWEIVFNEELGSP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78
0.63
0.9
70.2
41.3
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
52
0.14
2.1
82.88
37.6

Associated Gene:

Gene:
NUDCD1
Ensembl Gene ID:
ENSAPLG00000004835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004986
134575476 - 134609908
34433