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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134594730_134596352_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134594730 - 134596352
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
WVTIAEMSKEGDHQYEICRK
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.4
0.8
0.8
79.4
32.2
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
NUDCD1
Ensembl Gene ID:
ENSAPLG00000004835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004986
134575476 - 134609908
34433