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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134600877_134603144_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134600877 - 134603144
Intron Length:
2268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGTAT
5'SS Class:
major
3'SS Sequence:
ATTTGCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTCTTCTATT
Flanking Amino Acid:
SCTWIIKENKSLEISLIKKN
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
64.7
37.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.9
0.56
0.9
71.7
38.7
Minor 5ss
32
-2.1
3.5
46.5
48.8
Minor BPS
54.5
0.22
1.9
75.66
41.6

Associated Gene:

Gene:
NUDCD1
Ensembl Gene ID:
ENSAPLG00000004835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004986
134575476 - 134609908
34433