Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134603278_134604544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

134603278 - 134604544

Intron Length:

1267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTCAGAGTT

Flanking Amino Acid:

CLMHLTSEEMNPNPEKENPP

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

77.2

37.6

Major BPS

100

1.24

0.5

100

Major PPT

86.2

0.81

0.8

84.1

30.8

Minor 5ss

35.3

-1.7

3.1

46.5

42.9

Minor BPS

49.8

0.07

1.9

77.59

38.9

Associated Gene:

Gene:

NUDCD1

Ensembl Gene ID:

ENSAPLG00000004835

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004986

134575476 - 134609908

34433