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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134604671_134606655_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134604671 - 134606655
Intron Length:
1985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
DGDTLQVTHVINLGSNQYLF
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
NUDCD1
Ensembl Gene ID:
ENSAPLG00000004835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004986
134575476 - 134609908
34433