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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134830191_134835104_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134830191 - 134835104
Intron Length:
4914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATATATGAAAT
Flanking Amino Acid:
AANQINRAYQFAGRSKKESK
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
81.8
31.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
32.4
-2
2.4
35.7
40.3
Minor BPS
48.3
-0
1.8
69.72
40

Associated Gene:

Gene:
EMC2
Ensembl Gene ID:
ENSAPLG00000006617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006907
134830104 - 134876248
46145