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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134830191_134838362_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134830191 - 134838362
Intron Length:
8172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATATATGAAAT
Flanking Amino Acid:
NMRALFGLYMFAGRSKKESK
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
48.3
-0
1.8
69.72
40

Associated Gene:

Gene:
EMC2
Ensembl Gene ID:
ENSAPLG00000006617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048091
134830104 - 134876248
46145