About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134835210_134838362_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134835210 - 134838362
Intron Length:
3153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGC
Flanking Amino Acid:
NMRALFGLYMSASHIASNPK
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.5
0.71
0.8
73.9
35.7
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
58.1
0.23
1.9
73.08
38.7

Associated Gene:

Gene:
EMC2
Ensembl Gene ID:
ENSAPLG00000006617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006907
134830104 - 134876248
46145