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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134842056_134842221_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134842056 - 134842221
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTGTACA
Flanking Amino Acid:
AIRELNEYLEQFVGDQEAWH
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.9
0.85
0.8
84
31
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
64.2
0.44
1.8
79.82
35.7

Associated Gene:

Gene:
EMC2
Ensembl Gene ID:
ENSAPLG00000006617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048091
134830104 - 134876248
46145
ENSAPLT00000006907
134830104 - 134876248
46145