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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134867727_134870899_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134867727 - 134870899
Intron Length:
3173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
CTTTTATGTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTATCTAAATT
Flanking Amino Acid:
NEYASKLGDDIWIIYEQVMI
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69
37.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.9
73.4
41
Minor 5ss
33.8
-1.8
3.2
45.1
43.8
Minor BPS
61.7
0.44
1.7
78.47
38.2

Associated Gene:

Gene:
EMC2
Ensembl Gene ID:
ENSAPLG00000006617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048091
134830104 - 134876248
46145
ENSAPLT00000006907
134830104 - 134876248
46145