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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134929620_134934524_R

Intron Information:

Intron Rank:
136972
Intron Class:
major
Intron Phase:
Intron Coordinates:
134929620 - 134934524
Intron Length:
4905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
TCCTGTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
40.7
-0.6
2.4
58.14
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040941
134929015 - 134940693
11679
ENSAPLT00000043588
134929015 - 134947856
18842