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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134934594_134940279_R

Intron Information:

Intron Rank:
136973
Intron Class:
major
Intron Phase:
Intron Coordinates:
134934594 - 134940279
Intron Length:
5686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TATTTTTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
87.3
0.84
0.7
85.6
29.1
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
41.6
-0.5
3.5
71.67
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040941
134929015 - 134940693
11679