About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134961128_134964050_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134961128 - 134964050
Intron Length:
2923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGGTTTTTATCT
Flanking Amino Acid:
PETTRQMQSTRDGRMLFDYL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
77.5
29.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
61.9
0.45
1.6
75.73
41.5

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725