About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134966407_134967916_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134966407 - 134967916
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TTTGGTTTAACC
Flanking Amino Acid:
TRLKETIDNNSVSSPLQSLQ
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
82.8
0.74
0.7
78
30.8
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
65.1
0.45
1.9
77.59
39

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725